YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE29573
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	42	0.91
Non-Cytoplasmic	43	59	0.87
Transmembrane Helix	60	82	0.88
Cytoplasmic	83	90	0.77
Transmembrane Helix	91	112	0.91
Non-Cytoplasmic	113	117	0.70
Transmembrane Helix	118	142	0.87
Cytoplasmic	143	148	0.90
Transmembrane Helix	149	173	0.87
Non-Cytoplasmic	174	180	0.79
Transmembrane Helix	181	200	0.95
Cytoplasmic	201	390	0.97
Transmembrane Helix	391	406	0.84
Non-Cytoplasmic	407	429	0.70
Transmembrane Helix	430	449	0.81
Cytoplasmic	450	467	0.92
Transmembrane Helix	468	488	0.93
Non-Cytoplasmic	489	496	0.72
Transmembrane Helix	497	520	0.88
Cytoplasmic	521	528	0.77
Transmembrane Helix	529	551	0.86
Non-Cytoplasmic	552	558	0.82
Transmembrane Helix	559	581	0.93
Cytoplasmic	582	594	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGAPVSSGG GKLVPLPPDG GWGWVVVLGS FFVHVFADGF VYSFGVLVET LMEEFHASNT  60
   61 MAALIISLLT GLTLGSGPLA SAVCNKYGCR ITTITGAGVA FVGCALSYFA TAMWHIVITV 120
  121 GVIMGTGFGL MYCPAIVIVT MYFENKRSLA TGIAVAGAGV GTVLFAPINA FFINNYGWRS 180
  181 VFLAFLFILV LCALCGATFA PLEFALVPDE EEEVNDEVLD EDVKKTAANE EHGEKATLLS 240
  241 PPSLLERSMS QSSGVQKAGE KIRPASSMGA VDVESQPRSR RGTVGERDSG YLNRKDVFYT 300
  301 GSISNVAEFR EDPDKYRSTG SLHGRHTTVG SIPAHSTGRL DDVREGSEED SKAMDISEKT 360
  361 NGTDNTDNVE GKNMFKTISN MLSLELLLEP TFLLFAISNL LTSVGFNSPL YFLPLHATKI 420
  421 GLEPIQGSKV LSAFGVSNTV GRIIFGVVAD HKLPLPGGIG NDTARNRLWM YNISLTICGL 480
  481 LTVFCYQFNG FIPLATYSAL FGFSIASYIC LTSVILVDLL GLDKLTNAFG LLLLWQGVGT 540
  541 VFGPPVSGYL ADMTGNYTLS FVFCGVNLLA SGLMLFGIPF FQKKAKAKAL AIKK