YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugt-18
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFALILFFV LIHSTLTYKV LVFNPAYGAS HSNFLGKISD ILIDAGHNVT MLIPEYLITK  60
   61 KDFVGSKKVK DVVRIGRDER AGKLFEEEGI EHMGRARVWR MDPEMMSLVT IVGSMNLAIG 120
  121 YQCEYIFQQK DIIDRLRNEH FDLAITESLF ACPFALFDHI GIKNVINAES NLFKDAVKYA 180
  181 HGEPAAISYY PGLFSPHDDK MSFVARVKNM ITMLFTKYLY GSRYEKELEM IKPYYNGTET 240
  241 WEDLFTGVAF NLINSNQYID YPSPALPKTV FVGGMQVNTN EAKTKLSDEW NNILNIRKQN 300
  301 VLISFGSNAF SSEMPEEFKK SFLYVFGNMP EITFIWKYEE ANATLTSHLP NVKLTTWMPQ 360
  361 NDLLADDRLT LFVTHGGLGS TMELAYQGKP ALIIPLMADQ PRNAHMLKRH GGCLQYHKTM 420
  421 LGDSEQLLKA FKTVLTERKY SENAQRLARI LRDQPVSPKD LVLKHCEFAV EHGALNSLNS 480
  481 RGRYLNTFQF YSFDIASSIV MLALLVLVFI YFTLLFIFKL VARIFLSQKT KME

Type	Start	End	Confidence
Signal Peptide	1	17	0.97
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	494	0.99
Transmembrane Helix	495	518	0.89
Cytoplasmic	519	533	0.87