YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugt-56
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.59
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLWAFIVWLG ALCIYGSAFD ILIYAPRMMQ SHVYFTARIA NVLAARGHKV TVIDNVFRYD  60
   61 VDNELSSDIH EIISVEPSPE VTKLLNTGSL PTILWNSKAS PEEQRTIMEG LGHVHRLQCT 120
  121 HLIENSTLIP KLQEIKFDFA IHEVFDSCGV GILEVIGVQK TVIVSSTGPM DVVPITLGIS 180
  181 DTLNTPSLLS DYGSYLSFFE KRRNLKFLSG MLNFHEMQDS MISPLFKKYY GLKKPTGEIM 240
  241 RQANLLFYNI HEGSDGMRMR GRRSFDIGGI AFKDQKNLTM EYQTLLSDPR PKVLVSFGTA 300
  301 ATSSHMPQNL KNSLMTAMKQ MNNVLFIWKY EMEDNFTKQE ELTTNIIFKK FLPQTDLLAS 360
  361 SKIDLFVTHC GQNSLLEAFN SGVRVLAVPL FGDQHRNAKL AFENGLIEIL PKSDIETPAK 420
  421 IVKAVKTGLE PNAKLDQNIV LISSLLRNSK ENAENLLIST IEATYSTEFP PNFSKFPKNY 480
  481 HPNTLVRLID SSIALVFMLF IFVFVNHFRK NYVGFKYPLS FSTK

Type	Start	End	Confidence
Signal Peptide	1	18	0.65
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	487	0.85
Transmembrane Helix	488	508	0.81
Cytoplasmic	509	524	0.74