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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: lad-2
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLVIAQFLL ITQVFAAQKN SIGPPKLLEQ SGEEVWYHLD DEDLLKNRLT LRCEADENTD  60
   61 RYSWLKDGEP FVIDSEDVLW EKESQSGSIV FTKPHASHQG YYQCFASNIF GTALSNKMHL 120
  121 RLGSLEHFPK RDVKLLRVKE GESLTLNCTP PRGTPDPKIV WLYRSLDDSS VIETIRSRHI 180
  181 TVDNEGHLHF SSVELSDGKA TLVYECAATS PVLRGEYRSG DRIQLDIEPS QDKSHPVKKM 240
  241 SVSPSEVTVR AGGQLKLQCI FGGRPLPTIF WSKIDGELPK SRIKDLTSHE SDFGRSLIVE 300
  301 NVHPDDAGAY ECRGRHLVHT VNVRVMAAPF WEFDPPRDIS LPEESTGELE CLAGGQPTPI 360
  361 ITWSMNGKFL HELAEDSRRV LLDHGRILRV RNLNHDLDTG VYQCNASNPL GYVFANAFVH 420
  421 VRAHAPFFRM PAARHWKVVL HSTVVLDCDV DAAPEAMVRW VDADDRPLQV VEGKNKLFPN 480
  481 HTFMVYDVNS ADEGLYYCNV SNKYGINRAT NRLQVFKPTY FVRIPTPKRL ILEAGETAEV 540
  541 FCEAVADPRL PIRYQWTING KVLTESQYYE ILPDRLRFRS VRGRHSGIID CAAITDVDVK 600
  601 LASMQLIVKD VPAHPVVETA HCSERKATVK WVAASDHGDS IKKYIVEMFT DFKKNEWEVI 660
  661 NEEVNVNKET FEVDITLTPW VNYTFRVVAV NSHGRSDMKI DGQPKEDWLT CQTRPSFPYT 720
  721 NPTGVKGEGT EPDNLVISWK PLDRYYWNAP NMQYLVRYKL DEPIHGWTEF LVEDSLANFT 780
  781 IIRDQPTFRK YLIQVQSVNS VGPSIVEPEI HHGWSGEDVP DEAPRDFHID TQINFTTINF 840
  841 TWNPVDANTV NGHFVGYEIE YWKAENTIRK YSIKIPANST YKVINSFHAV TNYSAHIRTR 900
  901 NKRLRSAPSD YVSFAMPEGP PGKVHNLRVY SVGSTAILLQ WDAPLQPNGR IRGYFISFQN 960
  961 EKNETEETYV IHRQKHYLHE KSEPDTGYKV SVWAETRAGE GPVTLRPVRT WPARIPDAPI1020
 1021 FRVKNISLDS FVVEWQPNNH SVWKMPGAAF FVNYTAESSK TWFQSEIIYL PYTEITIRNL1080
 1081 KEDQKYFMQG IAKDGPRRSE SVFLPIKTLN RDYANRLKED SLRSAAWFIA VLGVLGIGLF1140
 1141 TICLTFCCGN KNRQEKFAVR RKEIEIGHQQ DNEEEKQFLE YQYGFKN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle