YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE32237
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	43	0.93
Transmembrane Helix	44	64	0.88
Non-Cytoplasmic	65	77	0.77
Transmembrane Helix	78	99	0.89
Cytoplasmic	100	107	0.84
Transmembrane Helix	108	129	0.90
Non-Cytoplasmic	130	138	0.74
Transmembrane Helix	139	161	0.91
Cytoplasmic	162	170	0.80
Transmembrane Helix	171	190	0.94
Non-Cytoplasmic	191	204	0.78
Transmembrane Helix	205	226	0.92
Cytoplasmic	227	340	0.98
Transmembrane Helix	341	365	0.86
Non-Cytoplasmic	366	377	0.87
Transmembrane Helix	378	397	0.91
Cytoplasmic	398	406	0.83
Transmembrane Helix	407	427	0.91
Non-Cytoplasmic	428	432	0.74
Transmembrane Helix	433	456	0.88
Cytoplasmic	457	467	0.83
Transmembrane Helix	468	488	0.95
Non-Cytoplasmic	489	498	0.83
Transmembrane Helix	499	519	0.93
Cytoplasmic	520	544	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKQPIDGPL DAEKKEVTVA VTAAENFEEQ VEEVGKVTPP DGGYGWVVVA ASFLVNMAVD  60
   61 GVIYTCGKIL VPIWADQFGS TSVAGAVISI LTGCYYLAGP LASSFVNVFG IRSVAIAGSI 120
  121 LATTAFLLSR FASTIWELYL LFGVLGGIGF GCMYLPSIVI LSTYFAKKRS VATGIAVCGS 180
  181 GIGTMVFSTI NGPVFDYFGK DVGSFMVYLA AIAISGSLFS LLFAPLKATE HQVKKVAKMV 240
  241 RNYEGKPEEP TQRLLEDVRN DLEELNRPGH NADTFYAGNA PVSRSRSNTL DRKAAESAEA 300
  301 HVVHATEHHT VHHVVKKSKF TKFKESLCSV LDKDLLFSPS FMTLAVSGTF TVLSFLVPFV 360
  361 YLALAMKQKN PDFTDAELSL PVTLIGAFNI MFRIGCGMVA DHPKMSALQV SNVATIIAGT 420
  421 SMLFVPFCTE LWHYVVFCIP FSAGVACFAA LRSVICVELI GVEKLSNAFG ILMVFMGIGA 480
  481 VVGGPIAAQI KDITGNYDIS FYVMGIIFAF SGVMTIRLPE LKAWEESKKL ARAGTEMRVI 540
  541 SEAS