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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: scp-1
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.43
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDRVKIRWK EAKERIGNAY HDYGRLCAAH PKACLSMSLL TMIVLSYPTI TRLRLPVSTP  60
   61 IDVFWSEHLH VNDKIAPFWI NENPASYIQQ FIVSTTISPW NATEMGPEHA VRAAIATAFR 120
  121 IRQILLAEPA VEELCLRLAN QRQDSSWPFR SKSLCVVLSP ASIWYNNLQK FREDDDTITT 180
  181 VFNEHCKSTF CMRDLLLGAP IAATGIKQKY QTNRKRKIEF AVTMFFARYS KKVIQGIREK 240
  241 LQKEFELVDT PPNDQRTFVQ VYFHPLKTFS DYIPLISTYF VCMIYVYYSS RKIQMVASRW 300
  301 GLAFASSFTV ASTLLMTTGI CAHLDLSTTT WGSEVYPYIA LIMGLENTLC ITRSVVYTSP 360
  361 SLDVSSRIAH GLSQEGYKLT KYYILELLAL LIGFLTRISD IQEFCQFSVI CVTVDFYMQL 420
  421 FFYAPCLTFD LQRLGLEEKR KFAEILLYEE IPRLKNYAPV SCPMRKIWPK LFVMKKMQKR 480
  481 RVSDSGIEDV MKNDEQRRLL ISSEFDSKDD GDVQEPRPED SVRMKIMYFI TRTRIVQRTI 540
  541 LVVFAIWTVF LVFFVGSRQL GMESNLTNQS IESLTRSHRI LSTANLQYGN WQRRTYKWWP 600
  601 PVAHEYNISL NSRYVTFLPP IVINAIVHPT DILLQNVEKT HVNVPNEEED APILRSRIDW 660
  661 LEMQLKMYLA AFWLLLITTV ISFFAYVFLI DRWKLRGVKQ IQEQQMSETT TDSSETVKNF 720
  721 VDTLPIVYQG HRFPIESVAI DPEDTSTFVS CCQEGVVYVW NTQTGQRTLR INRLRAVPEK 780
  781 GKEIPSAPKI WAIAKRNDIV ILGCCDGSIE IASISRNKLI GLYTKSTIGA SHVVCREDDV 840
  841 AVVRLDGSIE FLRIDYDRTD GTIRVRKIEL LKSVRAHQKP VCRIAIWKSQ LITSSFDRSI 900
  901 KMWNWAENPE QIDISNVFLA HNSPVVNLAV DEATSIMYSS CEEGVICWWN LNTGELIRTN 960
  961 DNNYTWAFQL ATSSDYLLGF YGSSQLYMWN VENGQLACRV SDALGDGTSE DTLYTVGSSG1020
 1021 VVSFDDQVAA TTSSDSVTFW DLKHRAIIGK VKLNGKISSM RKNTSHSVLC GVDNSMYSVT1080
 1081 VPLVRFK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle