YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sdn-1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILKLNFCLS TYSVLILLSL STQAFAANQA KTKVVPSSTI STKSLKNGIS EVEGSANIPG  60
   61 RLADIEVNGS GYPTDDEDGD DVHGSGKPPS SATTKSDKVT SPSHAVVTAK PTTVPTTTAS 120
  121 FKPPVQPKPK PAANDKEIKV EEDEDDDEDE DEDDEDDEED FADENIHNDE DFFTTTTTTT 180
  181 YRPIVVATTS TPRSAATNPP RQQPPMVTST ISSGPFSPFH ETLANGFYAA IAGGVLVAVI 240
  241 TAILLVLFVV FRIRKKDEGS YALDEPKQAR PYASYGYTKA STKEFYA

Type	Start	End	Confidence
Signal Peptide	1	26	0.99
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	225	0.99
Transmembrane Helix	226	250	0.93
Cytoplasmic	251	287	0.98