YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugt-54
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.79
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTLLGFLIL PGFANCLNIL FYVSVIAQSH IPFHNTAIKV LLDRGHTVDL VIAQLNEMVK  60
   61 LKFPNGVGKN YTFGYEDPNF YRKNAGHLSD IFVEKPIPMA EFLTFDDMTF NLCETVVKDP 120
  121 NLLNYIKQGN YDIGLSSDYD PCANILMHAG GVPSKASMVP TPLFQPQIVS AGLPSPASVY 180
  181 GTVLYPKGDD SFFNRLFHLI RHTYNIYFVA PRLMEKYNNL LLETFGPTFP SAEEIERNVD 240
  241 IILVNSNEII EKPRPVSHKI KYIGGMGKKK AQPLNKEFND ILATSNKGVV LFSFGTQVAT 300
  301 SKVPIEIRKN FVTAFKHFPD FSFLWKYDNL TDDAELFADS SNIHRVEWLP QTDLLGDNRV 360
  361 KAFISHMGLN SFLETSAAGI PVLAVPLFID QQHNALNAVS RDIGVIVERH QLTVENLVNA 420
  421 LQKLLYNPKY GENAKMISKM MNEKPEQSER LFVDWVEYAA KNPGLHKIMN LPGAELTPFW 480
  481 YYSVDVILIV VLSLTSSLII IWKTLSFIKC QISIRSVRSI EPKSKSE

Type	Start	End	Confidence
Signal Peptide	1	16	0.85
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	479	0.97
Transmembrane Helix	480	502	0.82
Cytoplasmic	503	527	0.84