YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugt-31
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.69
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFFIFFPIL LVASEPLNIL VYSPVFGGSH SKFMGNIADT LTEAGHNVTF LVSVADVTRR  60
   61 HEIGVKLTKN VIIVDKPNFS QDDVEIDMDE VLRPLWTIQN RPSDFATCFE FFIQMMQTTC 120
  121 AEFTSNREIF KKLSKTEFHV AIAEPVSICG LGYFDALGIK KTILASSTTH YEGVVRNSGE 180
  181 PVDMSYVPVH GAYFDEKMDI FQRYTNWASE HVLAGNLERM FDQEMSEYRK NLVQSTGHWR 240
  241 DLIPSASLMF TNSNPYLDFP RPVLQKTVGI GGITVDMEQI KSEKLPEKIN KLLEKREYNM 300
  301 LISFGSMVKS STMPEKWRNS ILSAIRNFPN VTFIWKYESD DLRWAENVEN VHFLKWIPQT 360
  361 ALLNNPRVSA FLTHGGLGST NELAFIGKPS IIVPIFGDQG RNAPMLARHG GALVLQKFDL 420
  421 ENAEVLIDFI GKIVFDKSYA KNAKTLANLL NASPFSPKEL VVKNTEFVGN FGPLTQMDPY 480
  481 IRKLNWFQRT FADIYLILFL VYASIIVIPI YVIRKVFRLI L

Type	Start	End	Confidence
Signal Peptide	1	16	0.67
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	490	0.98
Transmembrane Helix	491	513	0.91
Cytoplasmic	514	521	0.91