YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-31
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIPGKCTSE EIRLTLTSSF MMGNHCFILL IIISSVFLTV FAIRKLWKNN IFPNCTRTLL  60
   61 FSAIINGVVH HWSIAGIRIR TVYRALVYGS DRCSILFQSS ECLIESNLYY YTNLFSSLCC 120
  121 ISLFFDRLLS LNAKTSYNTK HFSKIFLLFQ SISPFGILYW IFYDSVYTGF VPMCSYPPAT 180
  181 SSLKFHKVNE FRLYILGTFF VLSFVIFFYN RTQEKGIIHN VYDTESRYKS YENLLATRAV 240
  241 CIIIATQITC LVTTASTTEI LSAYKSSIPN TILLPSIAFM TGLTYSNFFL PIIIIYQTNR 300
  301 IINQRYNAIK RIQNEKSFAT HFASLDLSWK SSKIDNSS

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.75
Transmembrane Helix	21	43	0.88
Cytoplasmic	44	54	0.62
Transmembrane Helix	55	74	0.80
Non-Cytoplasmic	75	107	0.79
Transmembrane Helix	108	129	0.76
Cytoplasmic	130	144	0.83
Transmembrane Helix	145	163	0.96
Non-Cytoplasmic	164	190	0.95
Transmembrane Helix	191	210	0.93
Cytoplasmic	211	233	0.94
Transmembrane Helix	234	256	0.86
Non-Cytoplasmic	257	271	0.83
Transmembrane Helix	272	296	0.85
Cytoplasmic	297	338	0.93