YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-27
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMYTNQTAE ELETWRCTSD GIFKSQNSIW MKINFVFVFI LIFLTFYLSF KAARVLKNHN  60
   61 VYSKGSQILL MITLLNANLN QLIFLEIRIR HLVHIFINSE DPCKIEFHSP ECTYDQTIYA 120
  121 FTSVMSTGLL SALTFDRFFA LYASTVYVRN SKDSAYMLIT VSIIVTVIVH IRTYGGVSRA 180
  181 GYVPSCTYPP QLSLNTYQVV NNAIFWIIMA NCVLTIAVLL LNIYKDKRIK KSVFDTKTRY 240
  241 NSFENVLTTK AICSVTSTQF VFLSFSTAAL AIIRTLEAGM SEEVFHINIQ YINGGVYGNL 300
  301 SIPVLIYLKT NQCILQRRKS IDKMTNHTGT VDSHISSLKT AWET

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.62
Transmembrane Helix	29	50	0.89
Cytoplasmic	51	64	0.54
Transmembrane Helix	65	85	0.63
Non-Cytoplasmic	86	116	0.79
Transmembrane Helix	117	139	0.72
Cytoplasmic	140	154	0.86
Transmembrane Helix	155	174	0.94
Non-Cytoplasmic	175	202	0.95
Transmembrane Helix	203	224	0.94
Cytoplasmic	225	251	0.93
Transmembrane Helix	252	273	0.69
Non-Cytoplasmic	274	288	0.68
Transmembrane Helix	289	308	0.66
Cytoplasmic	309	344	0.84