YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE33959
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLICVKRIFV LAGLFMFPGM YHLELFAYAQ YIGAIAYLLF NFVAFYIYIR NKSIPELEQF  60
   61 STFSDLFPKF SEGIDRDSIH AVFTMFSHSI LKQLLTDGSA YVMTFTELLS LKDQAVYDAV 120
  121 ERVGSIIVRT ILSPIDENCN AYFSNTIRKE SSVFNKNTDN HDDLVDTLSK VLHVVGVIGF 180
  181 VACTFGIPYS PVVISLYGGK LLSENGGALL LSLYSGYILV TAINGITEGF AMASMDNRQI 240
  241 FTHGKFLFVT SIIHLIINYV LCVYMNSAGF IVANIINMSV RIIYK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.74
Transmembrane Helix	7	23	0.82
Non-Cytoplasmic	24	28	0.64
Transmembrane Helix	29	49	0.90
Cytoplasmic	50	170	0.95
Transmembrane Helix	171	193	0.83
Non-Cytoplasmic	194	207	0.74
Transmembrane Helix	208	231	0.81
Cytoplasmic	232	245	0.69
Transmembrane Helix	246	273	0.77
Non-Cytoplasmic	274	285	0.58