YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	fce-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAGLVSACL PISYVLLVHL FDRNGTDRND PESVKRRFKG ALLSNFVSIV VTAFYLRDYT  60
   61 DSPMLEMGVR WDNIGQSITY PFILMNAFYL GQFVMMQIDR TLWHYFDWYE WKLCFNSWVW 120
  121 RRDIIVGPIT EEIVFRACSS TLMAHVYGPT MTILLNPIPF AASHFHHIWD DQRRGYSLAH 180
  181 SILQRGFQFC YTYLFGAFAT WLQLTTRHAI VPIIAHAFCN AQGLPLWLEI PNYPKRRDRL 240
  241 TLYAAYSVGF AAFVHLLYTR NGMPTP

Type	Start	End	Confidence
Cytoplasmic	1	37	0.85
Transmembrane Helix	38	57	0.80
Non-Cytoplasmic	58	76	0.79
Transmembrane Helix	77	96	0.88
Cytoplasmic	97	181	0.63
Transmembrane Helix	182	202	0.66
Non-Cytoplasmic	203	208	0.53
Transmembrane Helix	209	228	0.75
Cytoplasmic	229	239	0.84
Transmembrane Helix	240	259	0.93
Non-Cytoplasmic	260	266	0.89