YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pes-22
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.90
Transmembrane Helix	18	39	0.89
Non-Cytoplasmic	40	57	0.88
Transmembrane Helix	58	80	0.89
Cytoplasmic	81	87	0.86
Transmembrane Helix	88	107	0.93
Non-Cytoplasmic	108	114	0.72
Transmembrane Helix	115	140	0.87
Cytoplasmic	141	147	0.86
Transmembrane Helix	148	171	0.90
Non-Cytoplasmic	172	177	0.83
Transmembrane Helix	178	196	0.96
Cytoplasmic	197	456	0.99
Transmembrane Helix	457	479	0.88
Non-Cytoplasmic	480	491	0.87
Transmembrane Helix	492	512	0.94
Cytoplasmic	513	522	0.84
Transmembrane Helix	523	545	0.89
Non-Cytoplasmic	546	551	0.71
Transmembrane Helix	552	572	0.93
Cytoplasmic	573	583	0.74
Transmembrane Helix	584	606	0.88
Non-Cytoplasmic	607	614	0.83
Transmembrane Helix	615	636	0.93
Cytoplasmic	637	677	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVQQVEPLL VPQAPDGGYG WVIVFAAFMS NLVVDGISTA FSEFKQSYKE RYQESDGLTV  60
   61 FIGSLIIGTY LLVGPLVSAL CNKYEQRYVV MAGGLISGIA FMIAPASPNI YVFMLIYGVM 120
  121 GGLGFGMIYL PAIVVVGFYF DSKRAMATGI SVAGSGVGTF LVPLICQVCI ANLGWQKTIW 180
  181 VLAVMIFSCV FYGYLYRPLP MVDLNEIRDQ EMEPLRQALS KVEDDEDEAV ESPHPNRSTS 240
  241 AASGAIEDEA VSQNPEVQRL RSILTEGDEG SETPKSDAHK VRSHTATRSR KHTMTSNSGS 300
  301 QHDLKLSRGN LSSDNRLSRV SARDFNQSLS KLSKSGGASN LSIAMSGVDP KEFQRPMNRQ 360
  361 DIFYGGSIQN LKEFKEEGTM AGYRASTLSI PRSVVGQAVS QLNLSRTGSR LGGPGIAEDE 420
  421 EEMIEPFVDD GCCKVLPLPM RNALSEMIDL NLLKNKTMMI LCISNLLGMM GFYIPIMFLK 480
  481 DLSESMKLDM SLAMFLVPIF GVFNTIGRVF FGWLTDQKIL SALTINNLSL IVSGLLTLAC 540
  541 PLLTSIAGQY FYAIVFGFII SAYICLTSIV LADLMGLENL TNSFGLLVVA RGIASLVGPP 600
  601 FAGIVYDITG SYDTAFYFGG LVLLVAGLIS ATIPFVTKKD ADTADLEEEK RKQKQNGVVE 660
  661 EGNEMDDNIP LKSLKNN