YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-33
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIISDKEIL EVRTSQVFRF SVYFIDTSCI ISMAVTVLAI FQLHSKQVFN PSTTRLLITD  60
   61 LVFINIHNLS YIFLQNWSLF RSFFYQTAND IMFKSEECWP HHVTNEFTKV VTVFNQFALI 120
  121 INRISVTIDS KRFSHANYGF LLAILSLIAS TVFTAQQHFL GPIHGMRTTS CFRESDVVLD 180
  181 LKTEHIIPYL AICLTSIVCS LLLIIYVKKT QKTKTYDIES EYTKKEAVVS SISVAILGII 240
  241 QLVLFCFYDT FLTIFAKLTA ENPNVHDTNI IGWFYTSPLN AIISPTAVFL YISWIKKNRQ 300
  301 MHIRKMTKVN KSENGCHFQQ LSVMWNK

Type	Start	End	Confidence
Cytoplasmic	1	19	0.88
Transmembrane Helix	20	43	0.90
Non-Cytoplasmic	44	55	0.77
Transmembrane Helix	56	74	0.79
Cytoplasmic	75	137	0.83
Transmembrane Helix	138	156	0.95
Non-Cytoplasmic	157	185	0.93
Transmembrane Helix	186	207	0.96
Cytoplasmic	208	226	0.98
Transmembrane Helix	227	248	0.92
Non-Cytoplasmic	249	272	0.87
Transmembrane Helix	273	295	0.92
Cytoplasmic	296	327	0.99