YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE35123
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTYTTSTRS PTTVISVNSS TSISTIVAGI NCDTVDYVQR YYPIAMMQII LLILSFSSIF  60
   61 LIIGGRIAQH HSYFHPNVKK LLKTYHGAIL MYGVSLGTAQ LYHVMTSMSY ESCELLISCR 120
  121 LCFGFRVIAT ATVLIFCLLL FAIPFERSIA TQHLGRGYEN RKGSIGKWFS WSTVTVSLVF 180
  181 SICYHWSDFS KNRVCTHCIY DQNRVLIPME LMIWLTGMSI SSLIYTFGLW IFNRCKLKKK 240
  241 TYSLAIEFQI NQNLRILHLV LPLSLLTSLA FIWYSISPKW FKISMDIDPE KKQFHEMVQN 300
  301 IFPLYTLLSS SLWLVMMISE KKKKRIGLVP PEARKDEKDV YFKSLDNQWS KVPSQKPSVK 360
  361 MQILTVFSTP RNSMIVA

Type	Start	End	Confidence
Cytoplasmic	1	11	0.64
Transmembrane Helix	12	30	0.62
Non-Cytoplasmic	31	43	0.80
Transmembrane Helix	44	65	0.92
Cytoplasmic	66	83	0.86
Transmembrane Helix	84	104	0.91
Non-Cytoplasmic	105	122	0.90
Transmembrane Helix	123	145	0.91
Cytoplasmic	146	164	0.93
Transmembrane Helix	165	186	0.89
Non-Cytoplasmic	187	211	0.95
Transmembrane Helix	212	233	0.95
Cytoplasmic	234	253	0.96
Transmembrane Helix	254	276	0.93
Non-Cytoplasmic	277	300	0.90
Transmembrane Helix	301	318	0.92
Cytoplasmic	319	377	0.97