YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE35237
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVVIKTLRS PVFCFAIIIS VIIVATKLQF NNSSGPQTTL LEPKRYLSSR MAPAARLGNH  60
   61 IFELAAVLGI ARVLNRTATF FIEDDFYREM LENTSEAIPG LVNQFELVNG TVPSPTKTTK 120
  121 LNTRCCIFVD PLILENVNDQ YLHLDGLFYQ AWKYFPSMRD ELSGYLKKSK KNYWLPKPDN 180
  181 DTFVTCAHVR RSDFTSNGFA ASESTFVRSA LDFIQDKENG EKLKNTIVLF GDDPKFMRNI 240
  241 FNNTSLSDQQ DSQILNTTYF VSQNSPSDDL VYAKDVCDVV LISAPHSTFG WWIGYFSKGD 300
  301 KVYYMDIRET NDWVYRVGEL NPYDYFMPHW IPLKFASNNS TIVESLK

Type	Start	End	Confidence
Cytoplasmic	1	9	0.72
Transmembrane Helix	10	28	0.80
Non-Cytoplasmic	29	347	0.95