YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE35459
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.91
Transmembrane Helix	10	30	0.94
Non-Cytoplasmic	31	64	0.93
Transmembrane Helix	65	86	0.91
Cytoplasmic	87	91	0.91
Transmembrane Helix	92	114	0.90
Non-Cytoplasmic	115	123	0.74
Transmembrane Helix	124	144	0.88
Cytoplasmic	145	151	0.74
Transmembrane Helix	152	173	0.90
Non-Cytoplasmic	174	184	0.80
Transmembrane Helix	185	204	0.96
Cytoplasmic	205	247	0.97
Transmembrane Helix	248	271	0.86
Non-Cytoplasmic	272	278	0.81
Transmembrane Helix	279	298	0.86
Cytoplasmic	299	317	0.82
Transmembrane Helix	318	338	0.97
Non-Cytoplasmic	339	346	0.75
Transmembrane Helix	347	368	0.89
Cytoplasmic	369	377	0.84
Transmembrane Helix	378	402	0.84
Non-Cytoplasmic	403	410	0.88
Transmembrane Helix	411	430	0.94
Cytoplasmic	431	458	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPVKHRFRY IVVFLGLACL TSILSNYIII NFTFICMKDD PTGIETTENG TIYNRYDYSV  60
   61 AEKSAIVWAV AIGTILGTGP INYSYVRFGA RIPFFIAGIV SAFATVLTPY GAYLGLPYLL 120
  121 ALRFAQGLAY SADFAAIGIV CVRWAPLAQT GLFISILTSF SPAATVMTNA ASGWLCKSSY 180
  181 GWQSAFYVHA AAGFIIFAAW LYFYNDDPQL NQKVSAKELT TIQKDKTKAH IERDSFVPYW 240
  241 EICKNRVILT VWINSFFEMT TLILLLTYSP IYFRKVLDFS VVETGMLISL SAVAHMPAKL 300
  301 LSGWLSDRQF LSERVRMWFF NTSSVGLAGF MCVSLAYIPV SWKYTSVIMF SIVYTLMGTN 360
  361 CGGFYKCGTF ASRQYAHFVL AMIQFMKCIA LFAAPATVAI FVSDESSHTQ WGHVYILNGL 420
  421 LMFIANILFF PMATDKPQSF TFVTRETIEE EKKKHQFA