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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: tre-4
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.97
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRWTPQLLIS VLIGYVQARL EISELRFKDI LSSHYIFKPL EVPCNESLCT GPLSEIYCHG  60
   61 PILTNSWQFG LQKTCPGDKL KVTAKEVLAN FNKLPWPLKK EVFQQFCEEH FEQVNYLEVV 120
  121 NLTDYEVQPK FLNEIGNLSH RKLAAEMHER WERLARQFTS DVQHHPDLYP LIPVQNPFIV 180
  181 PGGRFDVYFY WDTFWIIKGL LVSRMFETTK GIINNFSNLV VTLGYIPNSG NLQLSRRSQP 240
  241 PLFPHMIWEY TKATGNYEKQ WIDSMDMEMK FWENNRTIAI GTHKLFLYKT LTNCPRPENF 300
  301 LGDFNIGKAA KTPSDVWRSI SSACESGWDF SSRWMHNNDT DLSSIHTDLI IPVDLNVFIA 360
  361 NNYRYMAYYA NHFGRFDKSA SYRQKYEKLR YAIQEVLWDN NLGAWFDYDI SIQKRNLNFY 420
  421 PSNVYPLMLE GMDKFADRVE DYMKKSGALE FVGGIPSSLP AQSTQQWDFP NVWAPNQHFV 480
  481 IQSFMACNNS FLQQEAKKQA MEFIETVYNG MYNPIAGLDG GVWEKYDARS TNGAPGAGGE 540
  541 YVVQEGFGWT NGAVMDLIWT LRDSHKKQIR SENLKLDQGQ HFALVLTAFI FCIAIAFIVI 600
  601 IKGIIKGNTL NQRDDEEAGA RLLAEENDED DQEEL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle