YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-10
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPITANSSK CATEDQMILQ TSLLLRINVI IMTIVAIITF ILTYKALFIL KIRPIFHSST  60
   61 KILLYTSLLF VNVHAVIFMV IQNTALIRSF TLSDKPCEIM RTTLECRFQN HVLIFGIAGV 120
  121 NFNQFGLTVD RLLATIIPQS YSHMGALPGV ILSVLVVACS IAAPLIIAIG DPYDDIVPNC 180
  181 FFFPEHSAPR ANIFLVTLST LVITSIFLNF IIIYANKKLE KGTRFYVTQR YQKREALIST 240
  241 RIISYIAASQ FLGLTLYSTM VLTLRLHKSM IPISIYHNMV WWAYTVPFAA VSLPALLIYR 300
  301 INQVGSNRKR VINRITAKVE TQEEHMKSLK ELWA

Type	Start	End	Confidence
Non-Cytoplasmic	1	23	0.69
Transmembrane Helix	24	48	0.84
Cytoplasmic	49	61	0.66
Transmembrane Helix	62	82	0.90
Non-Cytoplasmic	83	110	0.65
Transmembrane Helix	111	129	0.65
Cytoplasmic	130	145	0.81
Transmembrane Helix	146	169	0.90
Non-Cytoplasmic	170	190	0.96
Transmembrane Helix	191	215	0.90
Cytoplasmic	216	241	0.89
Transmembrane Helix	242	261	0.91
Non-Cytoplasmic	262	279	0.89
Transmembrane Helix	280	301	0.93
Cytoplasmic	302	334	0.98