YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mmm1
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIHLPQGSFT QGLIVGQLLT LAIIYVFLRF FLFCSPIPKS VANSPKQTGN ETPDETPSTP  60
   61 LSNNKKRYKK PLTILEPHIL NLLYDVNEHE PESLDWFNVL IAQALIQFRY DACSNDVALR 120
  121 KLETVLNKGA QDKSMVDHIY VRDLSLGDGF PVFSHCRVLP HQHNSSQLRA EMLVSLTDNI 180
  181 NCTVDTKLLL NFPKPAFATL PLSITVRICK FVGKVSLFTT LIVYSLYDSL HPSPGGLKHQ 240
  241 VLNRITVIMI YFSPSNGAGQ PAYMNLSFDP NFVISLQVSS LVGARSKLQD IPKITQLIES 300
  301 RIRQWFTNRC VSPQFQQIAI PNLWPTSAKE GHARSHAPQE ESSNED

Type	Start	End	Confidence
Cytoplasmic	1	8	0.61
Transmembrane Helix	9	33	0.80
Non-Cytoplasmic	34	346	0.70