YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTGA_BACSU, PTG3...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.77
Transmembrane Helix	15	35	0.92
Non-Cytoplasmic	36	76	0.67
Transmembrane Helix	77	111	0.71
Cytoplasmic	112	135	0.46
Transmembrane Helix	136	160	0.87
Non-Cytoplasmic	161	179	0.50
Transmembrane Helix	180	201	0.93
Cytoplasmic	202	219	0.46
Transmembrane Helix	220	242	0.69
Non-Cytoplasmic	243	284	0.71
Transmembrane Helix	285	304	0.79
Cytoplasmic	305	312	0.78
Transmembrane Helix	313	331	0.91
Non-Cytoplasmic	332	337	0.71
Transmembrane Helix	338	359	0.88
Cytoplasmic	360	361	0.73
Transmembrane Helix	362	383	0.71
Non-Cytoplasmic	384	388	0.69
Transmembrane Helix	389	408	0.95
Cytoplasmic	409	699	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKALFGVLQ KIGRALMLPV AILPAAGILL AIGNAMQNKD MIQVLHFLSN DNVQLVAGVM  60
   61 ESAGQIVFDN LPLLFAVGVA IGLANGDGVA GIAAIIGYLV MNVSMSAVLL ANGTIPSDSV 120
  121 ERAKFFTENH PAYVNMLGIP TLATGVFGGI IVGVLAALLF NRFYTIELPQ YLGFFAGKRF 180
  181 VPIVTSISAL ILGLIMLVIW PPIQHGLNAF STGLVEANPT LAAFIFGVIE RSLIPFGLHH 240
  241 IFYSPFWYEF FSYKSAAGEI IRGDQRIFMA QIKDGVQLTA GTFMTGKYPF MMFGLPAAAL 300
  301 AIYHEAKPQN KKLVAGIMGS AALTSFLTGI TEPLEFSFLF VAPVLFAIHC LFAGLSFMVM 360
  361 QLLNVKIGMT FSGGLIDYFL FGILPNRTAW WLVIPVGLGL AVIYYFGFRF AIRKFNLKTP 420
  421 GREDAAEETA APGKTGEAGD LPYEILQAMG DQENIKHLDA CITRLRVTVN DQKKVDKDRL 480
  481 KQLGASGVLE VGNNIQAIFG PRSDGLKTQM QDIIAGRKPR PEPKTSAQEE VGQQVEEVIA 540
  541 EPLQNEIGEE VFVSPITGEI HPITDVPDQV FSGKMMGDGF AILPSEGIVV SPVRGKILNV 600
  601 FPTKHAIGLQ SDGGREILIH FGIDTVSLKG EGFTSFVSEG DRVEPGQKLL EVDLDAVKPN 660
  661 VPSLMTPIVF TNLAEGETVS IKASGSVNRE QEDIVKIEK