YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SP2G_BACSU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIYLDVIWL LNFCFDALLL LLTAFILKRH VKKRRLVGGA FIGSSIVLLM FTPFSPIVEH  60
   61 PAGKLAFSVV IVVVTFGFKR FRFFFQNLFS FYFATFLMGG GIIGAHSLLQ SNSIVQNGVM 120
  121 ITNQTGFGDP ISWLFIVGGF PALWFFSKRR IEDIETKNIQ YEERVSVQAD LGSQTLHVRG 180
  181 LIDSGNQLYD PLTKTPVMII YIDKLEPIFG TAETMIIRNT DPLEAIEQLD DSFRFLDKMR 240
  241 LIPYRGVGQQ NQFLLCVKPD HVTIMTKEEM ISADKCLIGI STTKLSADGE FDAIIHPKML 300
  301 SGKAVKHVS

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.94
Transmembrane Helix	7	27	0.94
Cytoplasmic	28	35	0.91
Transmembrane Helix	36	55	0.94
Non-Cytoplasmic	56	61	0.76
Transmembrane Helix	62	81	0.89
Cytoplasmic	82	87	0.87
Transmembrane Helix	88	109	0.93
Non-Cytoplasmic	110	126	0.93
Transmembrane Helix	127	147	0.89
Cytoplasmic	148	309	0.99