YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YRHL_BACSU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.80
Transmembrane Helix	14	32	0.84
Non-Cytoplasmic	33	38	0.77
Transmembrane Helix	39	61	0.88
Cytoplasmic	62	79	0.78
Transmembrane Helix	80	98	0.95
Non-Cytoplasmic	99	145	0.72
Transmembrane Helix	146	165	0.69
Cytoplasmic	166	171	0.82
Transmembrane Helix	172	191	0.94
Non-Cytoplasmic	192	205	0.81
Transmembrane Helix	206	223	0.91
Cytoplasmic	224	237	0.84
Transmembrane Helix	238	257	0.94
Non-Cytoplasmic	258	267	0.78
Transmembrane Helix	268	289	0.88
Cytoplasmic	290	305	0.71
Transmembrane Helix	306	323	0.84
Non-Cytoplasmic	324	329	0.75
Transmembrane Helix	330	352	0.85
Cytoplasmic	353	380	0.95
Transmembrane Helix	381	405	0.85
Non-Cytoplasmic	406	634	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYHKTQHHRY IPGLDGLRAF AVLSVITYHL NFNWANGGFI GVDIFFVLSG YLITSILLPA  60
   61 YGNDINLDFR DFWVRRIRRL LPAAYLMIFS TVVWVVLFDR ELLHTVRGDA ISSLFYMSNW 120
  121 WFIFHKLSYF DSFGSPSPLK NLWSLAIEEQ FYIIWPMFLV VGMYIMKSRA RLAAVISLLV 180
  181 LCSAVMMSVL YEPGGDPSRV YYGTDTRSFE LLIGCALALV WPMKRLSSNR LPSKLKHTLH 240
  241 ATEFLAFCIL VLCVYFTDEY EPFLYRGGML FISVTAAILI ACVCHPSSFL GNLLSWRPLR 300
  301 WLGTRSYGIY LWHYPVIVLS TPVQEIGNPV FWHIVLKVIV TCILAELSYH FIEKPIRTQG 360
  361 FRSFSRRVFI HRIKEWKTTS VISKMSIGFI IFAILIFAGG LSGLAGEQKH PTKWTYSSQE 420
  421 TNADTSQASG DKKNAAADKK HNPEQKTTDS NQGQKENKDS GQETHKKKDT QSQQLKKPAD 480
  481 TAKEVLAIGD SVMLDISSHL RQSFSNVTID GKVGRQMSQA LELAREYKSF NQPNKAVIIE 540
  541 LGTNGYFTNS QIEQLLQSFS KAHIYLVNTR VPRQWESKVN ESLQQQAHAH QNVTLVDWHT 600
  601 EALQHPEYFT PDGVHLVPKG AKTLTALIVQ AMKS