YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALG8_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHREKSDRR LLLWFFAVAT AVKLLLIPSS RSTDFEVHRN WLAITNSLPL TKWYFDETSQ  60
   61 WTLDYPPFFA YFERFLSIFA RLVDPRIVDL QSGLDYNAES VIYFQRISVI VSDLCLLYGV 120
  121 YRLTRKLEPL KRNLICALVI WSPGLLIVDH IHFQYNGFLL GWLLLSISFL QEGRDLLVTG 180
  181 FRRLVTIGAV VVAVFAAAYG PFIYHGQIQQ VISRMFPFGR GLCHAYWAPN FWVFYIILDK 240
  241 GLAVLLRKLG YEIQIPSASF TGGLVGDSSP FAVLPQITPL TTFAMVLLAI SPCLIKAWKK 300
  301 PHSGLVARWV AYAYTCGFLF GWHVHEKASL HFTIPLAIVA VQSLEDAKHY FLVSIVSCYS 360
  361 LYPLLYEPRS TRSRFCCCYC IPW

Type	Start	End	Confidence
Cytoplasmic	1	10	0.94
Transmembrane Helix	11	30	0.90
Non-Cytoplasmic	31	101	0.94
Transmembrane Helix	102	121	0.88
Cytoplasmic	122	132	0.78
Transmembrane Helix	133	153	0.86
Non-Cytoplasmic	154	183	0.45
Transmembrane Helix	184	206	0.88
Cytoplasmic	207	215	0.40
Transmembrane Helix	216	238	0.64
Non-Cytoplasmic	239	271	0.58
Transmembrane Helix	272	295	0.83
Cytoplasmic	296	304	0.83
Transmembrane Helix	305	325	0.91
Non-Cytoplasmic	326	346	0.92
Transmembrane Helix	347	366	0.68
Cytoplasmic	367	383	0.76