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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ECA4_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.72
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKGGEDCGN KQTNSSELVK SDTFPAWGKD VSECEEKFGV SREKGLSTDE VLKRHQIYGL  60
   61 NELEKPEGTS IFKLILEQFN DTLVRILLAA AVISFVLAFF DGDEGGEMGI TAFVEPLVIF 120
  121 LILIVNAIVG IWQETNAEKA LEALKEIQSQ QATVMRDGTK VSSLPAKELV PGDIVELRVG 180
  181 DKVPADMRVV ALISSTLRVE QGSLTGESEA VSKTTKHVDE NADIQGKKCM VFAGTTVVNG 240
  241 NCICLVTDTG MNTEIGRVHS QIQEAAQHEE DTPLKKKLNE FGEVLTMIIG LICALVWLIN 300
  301 VKYFLSWEYV DGWPRNFKFS FEKCTYYFEI AVALAVAAIP EGLPAVITTC LALGTRKMAQ 360
  361 KNALVRKLPS VETLGCTTVI CSDKTGTLTT NQMAVSKLVA MGSRIGTLRS FNVEGTSFDP 420
  421 RDGKIEDWPT GRMDANLQMI AKIAAICNDA NVEKSDQQFV SRGMPTEAAL KVLVEKMGFP 480
  481 EGLNEASSDG NVLRCCRLWS ELEQRIATLE FDRDRKSMGV MVDSSSGKKL LLVKGAVENV 540
  541 LERSTHIQLL DGSTRELDQY SRDLILQSLH DMSLSALRCL GFAYSDVPSD FATYDGSEDH 600
  601 PAHQQLLNPS NYSSIESNLV FVGFVGLRDP PRKEVRQAIA DCRTAGIRVM VITGDNKSTA 660
  661 EAICREIGVF EADEDISSRS LTGKEFMDVK DQKNHLRQTG GLLFSRAEPK HKQEIVRLLK 720
  721 EDGEVVAMTG DGVNDAPALK LADIGVAMGI SGTEVAKEAS DLVLADDNFS TIVAAVGEGR 780
  781 SIYNNMKAFI RYMISSNIGE VASIFLTAAL GIPEGMIPVQ LLWVNLVTDG PPATALGFNP 840
  841 PDKDIMKKPP RRSDDSLITA WILFRYMVIG LYVGVATVGV FIIWYTHNSF MGIDLSQDGH 900
  901 SLVSYSQLAH WGQCSSWEGF KVSPFTAGSQ TFSFDSNPCD YFQQGKIKAS TLSLSVLVAI 960
  961 EMFNSLNALS EDGSLVTMPP WVNPWLLLAM AVSFGLHFVI LYVPFLAQVF GIVPLSLNEW1020
 1021 LLVLAVSLPV ILIDEVLKFV GRCTSGYRYS PRTPSAKQKE E

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle