YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCO6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANEGSDPLL QYMISPRLKK PPQLLFPLPE DNEVAIPMPM TPSEFKERLI FGPFSCSPRD  60
   61 SSHFIDSMKQ PSPSSSSTAV NNPFSDSSTL DPLLPPPPPQ PEPWLSDQTS SHCQGHALHR 120
  121 SKTAPAMAVI NDLHHPIRQK DPTETSRSVV RQAFALLVVY LSLGVLIYWL NRDHYVVNQT 180
  181 HPVVDGLYFC IVTMCTIGYG DITPNSVVTK LFSIMFVLVG FGFIDILLSG MVSYVLDLQE 240
  241 SYMLDSAKRR DEPEKRRSYI IDVKKGRMRI RLKVALALGV VVLCIAVGVG IMHFIEEIGW 300
  301 LDSFYLSVMS VTTVGYGDRA FKTLPGRLFA AIWLLVSTLA VARAFLYLAE ARVDKRNRER 360
  361 AKKVLCETMS VSQFFAADID NNGCVSKAEY VIYKLKEMEK ITDKDILPIS KQFDKLDRCS 420
  421 NGKITLLDLL EGGSGD

Type	Start	End	Confidence
Non-Cytoplasmic	1	148	0.53
Transmembrane Helix	149	171	0.86
Cytoplasmic	172	181	0.48
Transmembrane Helix	182	200	0.52
Non-Cytoplasmic	201	210	0.77
Transmembrane Helix	211	236	0.82
Cytoplasmic	237	273	0.95
Transmembrane Helix	274	295	0.96
Non-Cytoplasmic	296	328	0.85
Transmembrane Helix	329	347	0.96
Cytoplasmic	348	436	0.89