YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PER52_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNKLISIL VLVVTLLLQG DNNYVVEAQL TTNFYSTSCP NLLSTVQTAV KSAVNSEARM  60
   61 GASILRLFFH DCFVNGCDGS ILLDDTSSFT GEQNAAPNRN SARGFNVIDN IKSAVEKACP 120
  121 GVVSCADILA IAARDSVVAL GGPNWNVKVG RRDARTASQA AANSNIPAPT SSLSQLISSF 180
  181 SAVGLSTRDM VALSGAHTIG QSRCTNFRAR IYNETNINAA FATTRQRTCP RASGSGDGNL 240
  241 APLDVTTAAS FDNNYFKNLM TQRGLLHSDQ VLFNGGSTDS IVRGYSNNPS SFNSDFTAAM 300
  301 IKMGDISPLT GSSGEIRKVC GRTN

Type	Start	End	Confidence
Signal Peptide	1	28	0.86
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	324	0.99