YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLY11_ARATH, PL1...
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTFNSFSFS TVHFLSSHLM FKFITESVFS LFIRILFSLI CRSVFNASRR SLAYLSCRTG  60
   61 NPIDDCWRCD PNWETNRQRL ADCAIGFGKN AIGGRKGRIY VVTDPANDDP VNPRPGTLRY 120
  121 AVTQEEPLWI IFKRDMVIRL KKELIITSFK TIDGRGSSVH ITDGPCLKIH YATNIIIHGI 180
  181 NIHDCKPGSG GMIKDGPHHT GWWMQSDGDA VAIFGGKHVW IDHCSLSNCD DGLIDAIHGS 240
  241 TAITISNNHM THHDKVMLLG HSDSYTQDKN MQVTIAFNHF GEGLVQRMPR CRHGYFHVVN 300
  301 NDYTHWEMYA IGGSASPTIY SQGNRFLAPN TRFNKEVTKH EDAPESKWRD WNWRSEGDML 360
  361 LNGAYFRESG AEAPSTYARA SSLSARPSSL VGSITTTAGT LSCRRGRRC

Type	Start	End	Confidence
Cytoplasmic	1	18	0.44
Transmembrane Helix	19	41	0.66
Non-Cytoplasmic	42	409	0.71