YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	POT13_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	106	0.89
Transmembrane Helix	107	128	0.57
Non-Cytoplasmic	129	142	0.58
Transmembrane Helix	143	163	0.79
Cytoplasmic	164	233	0.87
Transmembrane Helix	234	253	0.95
Non-Cytoplasmic	254	271	0.78
Transmembrane Helix	272	291	0.86
Cytoplasmic	292	298	0.77
Transmembrane Helix	299	320	0.90
Non-Cytoplasmic	321	348	0.87
Transmembrane Helix	349	368	0.94
Cytoplasmic	369	377	0.73
Transmembrane Helix	378	400	0.88
Non-Cytoplasmic	401	418	0.80
Transmembrane Helix	419	440	0.81
Cytoplasmic	441	474	0.85
Transmembrane Helix	475	496	0.89
Non-Cytoplasmic	497	502	0.68
Transmembrane Helix	503	524	0.89
Cytoplasmic	525	529	0.75
Transmembrane Helix	530	550	0.91
Non-Cytoplasmic	551	557	0.74
Transmembrane Helix	558	578	0.93
Cytoplasmic	579	624	0.73
Transmembrane Helix	625	650	0.72
Non-Cytoplasmic	651	855	0.49

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFHVEEESSG GDGSEIDEEF GGDDSTTSLS RWVFDEKDDY EVNEDYDDDG YDEHNHPEMD  60
   61 SDEEDDNVEQ RLIRTSPAVD SFDVDALEIP GTQKNEIEDT GIGKKLILAL QTLGVVFGDI 120
  121 GTSPLYTFTV MFRRSPINDK EDIIGALSLV IYTLILIPLV KYVHFVLWAN DDGEGGTFAL 180
  181 YSLICRHANV SLIPNQLPSD ARISGFGLKV PSPELERSLI IKERLEASMA LKKLLLILVL 240
  241 AGTAMVIADA VVTPAMSVMS AIGGLKVGVG VIEQDQVVVI SVSFLVILFS VQKYGTSKLG 300
  301 LVLGPALLLW FFCLAGIGIY NLVKYDSSVF KAFNPAYIYF FFKRNSVNAW YALGGCVLCA 360
  361 TGSEAMFADL SYFSVHSIQL TFILLVLPCL LLGYLGQAAY LSENFSAAGD AFFSSVPSSL 420
  421 FWPVFLISNV AALIASRAMT TATFTCIKQS IALGCFPRLK IIHTSKKFIG QIYIPVLNWS 480
  481 LLVVCLIVVC STSNIFAIGN AYGIAELGIM MTTTILVTLI MLLIWQTNII VVSMFAIVSL 540
  541 IVELVFFSSV CSSVADGSWI ILVFATIMFL IMFVWNYGSK LKYETEVQKK LPMDLLRELG 600
  601 SNLGTIRAPG IGLLYNELAK GVPAIFGHFL TTLPAIHSMV IFVCIKYVPV PSVPQTERFL 660
  661 FRRVCPRSYH LFRCVARYGY KDVRKESHQA FEQILIESLE KFIRKEAQER ALESDGDHND 720
  721 TDSEDDTTLS RVLIAPNGSV YSLGVPLLAE HMNSSNKRPM ERRKASIDFG AGPSSALDVE 780
  781 QSLEKELSFI HKAKESGVVY LLGHGDIRAT KDSWFLKKLV INYLYAFLRK NSRRGITNLS 840
  841 VPHTHLMQVG MTYMV