YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RL4B_ARATH
Protein type:	Transmembrane
Type Confidence:	0.54
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVASAAARPL VTVQGLDGDM STDQSTTVTL PDVMTAPVRP DIVNFVHAQI SNNSRQPYAV  60
   61 SKKAGHQTSA ESWGTGRAVS RIPRVPGGGT HRAGQAAFGN MCRGGRMFAP TKIWRRWHRR 120
  121 VNVNMKRHAI VSAIAATAVP ALVMARGHKI ENVPEMPLVV SDSAEAVEKT SAAIKVLKQI 180
  181 GAYDDAEKAK NSIGIRPGKG KMRNRRYISR KGPLVVFGTE GAKIVKAFRN LPGVELCHVE 240
  241 RLNLLKLAPG GHLGRFVIWT KSAFEKLESI YGSFEKPSEK KKGYVLPRAK MVNADLARII 300
  301 NSDEVQSVVN PIKDGSKRAV LKKNPLKNLN VMFKLNPYAK TAKRMSLLAE ASRVKAKKEK 360
  361 LEKKRKVVTK EEAQAIKAAG KAWYQTMISD SDYTEFDNFT KWLGASQ

Type	Start	End	Confidence
Cytoplasmic	1	124	0.52
Transmembrane Helix	125	145	0.49
Non-Cytoplasmic	146	407	0.99