YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SY124_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDLFSSSFK KYTDLKQQAQ MDDIESGKET MNLDKFFEDV ENVKDNMKGV ETLYKSLQDS  60
   61 NEECKTVHNA KKVKELRAKM DGDVAQVLKR VKMIKQKLEA LEKANANSRN VSGCGPGSST 120
  121 DRTRTSVVSG LGKKLKDLMD SFQGLRARMN AEYKETVERR YFTITGEQAD EQTIENLISS 180
  181 GESENFLQKA IQEQGRGQIL DTISEIQERH DAVKEIEKNL IELHQVFLDM AALVESQGQQ 240
  241 LNDIESHVSK ASSFVRRGTD QLQDAREYQK SSRKWTCYAI LLFIVVFALL LIPALPHIML 300
  301 MLK

Type	Start	End	Confidence
Cytoplasmic	1	274	0.82
Transmembrane Helix	275	298	0.89
Non-Cytoplasmic	299	303	0.68