YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SC5D2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.31
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATMADYND QIVNETSFYN RMVLSHLLPV NLWEPLPHFL QTWLRNYLAG NILYFISGFL  60
   61 WCFYIYYLKL NVYVPKESIP TRKAMLLQIY VAMKAMPWYT LLPAVSEYMI EHGWTKCYST 120
  121 LDHFNWFLCF LYIALYLVLV EFMIYWVHKE LHDIKFLYKH LHATHHMYNK QNTLSPFAGL 180
  181 AFHPLDGILQ AIPHVIALFI VPIHLITHLS LLFLEGIWTA SIHDCIHGNI WPIMGAGYHT 240
  241 IHHTTYKHNY GHYTIWMDWM FGSLMVPLAE KDSFKEKEK

Type	Start	End	Confidence
Non-Cytoplasmic	1	46	0.53
Transmembrane Helix	47	68	0.90
Cytoplasmic	69	85	0.62
Transmembrane Helix	86	105	0.72
Non-Cytoplasmic	106	123	0.65
Transmembrane Helix	124	147	0.88
Cytoplasmic	148	167	0.68
Transmembrane Helix	168	185	0.31
Non-Cytoplasmic	186	190	0.41
Transmembrane Helix	191	214	0.79
Cytoplasmic	215	224	0.46
Transmembrane Helix	225	242	0.42
Non-Cytoplasmic	243	251	0.57
Transmembrane Helix	252	269	0.54
Cytoplasmic	270	279	0.78