YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SPE2_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPALACVDTS FVPPAYAFSD TAGDVFIPAS SPTSAAVVVD RWSPSLSSSL YRIDGWGAPY  60
   61 FIANSSGNIS VRPHGSETLP HQDIDLLKIV KKVTGPKSSG GLGLQLPLIV RFPDVLKNRL 120
  121 ECLQSAFDYA IKSQGYDSHY QGVYPVKCNQ DRFVVEDIVK FGSSFRFGLE AGSKPEILLA 180
  181 MSCLCKGSPD AFLVCNGFKD AEYISLALLG RKLALNTVIV LEQEEELDLV IELSQKMNVR 240
  241 PVIGLRAKLR TKHSGHFGST SGEKGKFGLT TTQIVRVVRK LRQSGMLDCL QLLHFHIGSQ 300
  301 IPSTSLLSDG VAEAAQLYCE LVRLGAHMKV IDIGGGLGID YDGSKSGESD LSVAYSLEEY 360
  361 AEAVVASVRV VCDRSSVKHP VICSESGRAI VSHHSVLIFE AVSADKPMVH QATPGDIQFL 420
  421 LEGNEEARAN YEDLYAAVMR GDHESCLLYV DQLKQRCVEG FKEGVLSIEQ LASVDGLCEW 480
  481 VLKAIGASDP VHTYNINLSV FTSIPDLWGI DQLFPIVPIH KLDQRPGARG ILSDLTCDSD 540
  541 GKINKFIGGE SSLPLHELDK NGSGGRYFLG MFLGGAYEEA LGGVHNLFGG PSVVRVSQSD 600
  601 GPHSFAVTRA VPGQSSADVL RAMQHEPELM FQTLKHRAEE MMHTKGGSEG ENEEEEEDDE 660
  661 FNNVAASLDR SFHNMPYLAT EQASPSNSLS AAISNLGFYY CDEDVYDYIS A

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle