YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SYP43_ARATH
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATRNRTLLF RKYRNSLRSV RAPMGSSSSS TLTEHNSLTG AKSGLGPVIE MASTSLLNPN  60
   61 RSYAPVSTED PGNSSRGTIT VGLPPDWVDV SEEISVYIQR ARTKMAELGK AHAKALMPSF 120
  121 GDGKEDQHQI ETLTQEVTFL LKKSEKQLQR LSAAGPSEDS NVRKNVQRSL ATDLQNLSME 180
  181 LRKKQSTYLK RLRLQKEDGA DLEMNLNGSR YKAEDDDFDD MVFSEHQMSK IKKSEEISIE 240
  241 REKEIQQVVE SVSELAQIMK DLSALVIDQG TIVDRIDYNI QNVASTVDDG LKQLQKAERT 300
  301 QRQGGMVMCA SVLVILCFIM LVLLILKEIL L

Type	Start	End	Confidence
Non-Cytoplasmic	1	303	0.71
Transmembrane Helix	304	326	0.94
Cytoplasmic	327	331	0.70