YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119935851, gi...
Protein type:	Transmembrane
Type Confidence:	0.59
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSGRYLDDP LTFTRNPPSS SSPITESSFL AESISRSGSF ESGSLRGGDG DCFSDVDFAL  60
   61 DKLAGTVQFY ERHVFLCYKK PSVWPARIEA SEFDRLPRLL SSVISARKSS MKKETLLTIC 120
  121 EGHDGSETSN GDVLIFPDMI RYRRLTHFDV DTFVEEVLVK GVEWLPGNPE SLSSSYVFVC 180
  181 CHGSRDRRCG VCGPSLVSRF REEIDSCGLR GEVSVSPCSH IGGHKYTGDV IIYGLNINQR 240
  241 VTGHWYGCVT LEDVPLLLEQ HINKGEIVDR LWRGEMGLPE EDQKKTQEQR LQLNSEKISN 300
  301 REVTQESVNN SICCQSRAVP ELNGSGCQQN GNSSYCLEEI HTEKNTSERV TSVKNASLRI 360
  361 GSSENGSSGG FKVCAVMSMW LETWEREDTY AALAVACAAA SVAIAYNCYK QLK

Type	Start	End	Confidence
Non-Cytoplasmic	1	389	0.94
Transmembrane Helix	390	409	0.57
Cytoplasmic	410	413	0.51