YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|150378469, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.66
Transmembrane Helix	16	36	0.93
Non-Cytoplasmic	37	55	0.62
Transmembrane Helix	56	78	0.82
Cytoplasmic	79	85	0.47
Transmembrane Helix	86	104	0.81
Non-Cytoplasmic	105	110	0.59
Transmembrane Helix	111	131	0.85
Cytoplasmic	132	143	0.76
Transmembrane Helix	144	163	0.87
Non-Cytoplasmic	164	174	0.71
Transmembrane Helix	175	194	0.92
Cytoplasmic	195	239	0.94
Transmembrane Helix	240	261	0.93
Non-Cytoplasmic	262	272	0.83
Transmembrane Helix	273	294	0.85
Cytoplasmic	295	305	0.87
Transmembrane Helix	306	327	0.89
Non-Cytoplasmic	328	332	0.83
Transmembrane Helix	333	355	0.89
Cytoplasmic	356	366	0.76
Transmembrane Helix	367	386	0.72
Non-Cytoplasmic	387	394	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPPVGPPAV PPPDGGWGWA VVGGAFISIG FSYAFPKATT VFFKDIQRIF NASYSQVAWI  60
   61 SSIMLAVMYA GGPISSILVN TYGCRPIMIL GGFLCAIGMI SASFCNNVLE LYICIGVIGG 120
  121 LGLAFNLQPA LTMIGRYFYK KRPIANGFAM AGSPVFLSTL APLNQYLINE YGWRGSFLIL 180
  181 GGLLLNCCVA GSLMRPLVAP AGSIAPPPVV EVKHAEKEKL TAWQTVNKYL DLSLFKHRGF 240
  241 LIYLSGNVIM FLGFFAPIVF LSPYAKDNGV DEYQAAFLLS ILAFVDMFAR PSMGLLANSR 300
  301 WVRPRIQYFF SFAVLYNGVC HLLCPLAESY TGMVVYAVFF GFAFGMVSAV LFETLMDLVG 360
  361 AQRFSSAVGL TTIVECCPVL IGPPLAGQHN TTAL