YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4056468, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSPSSSFWN TASREAMKSG MFVAKVYCFL HVTTNYLGFM AYAYGPSMIP TLHPSGNMLL  60
   61 AERISKRYQK PSRGDIVVIR SPENPNKTPI KRVVGVEGDC ISFVIDPVKS DESQTIVVPK 120
  121 GHVFVQGDYT HNSRDSRNFG PVPYGLIQGR VLWRSIESLG KDNTTGIVTQ VVLDTALLRE 180
  181 TTNGLRIKTY QGGSGYVQGI RFTNVEMQDV ANPILIDQFY CDSSTTCTSA VKISHIMYRN 240
  241 ITKSAKAIKF ACSDTVPCSH IVLNNVNLEG KDGQVEAYCN SAEGFGYGVY SHNDKGLDQT 300
  301 HKSEEAETGH DEL

Type	Start	End	Confidence
Cytoplasmic	1	20	0.75
Transmembrane Helix	21	45	0.69
Non-Cytoplasmic	46	313	0.95