YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GSOX3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPAQNQITS KHVAVIGAGP AGLITSRELR REGHSVVVFE REKQVGGLWV YTPKSDSDPL  60
   61 SLDPTRSKVH SSIYESLRTN VPRESMGVRD FPFLPRFDDE SRDARRYPNH REVLAYIQDF 120
  121 AREFKIEEMI RFETEVVRVE PVDNGNWRVQ SKNSGGFLED EIYDAVVVCN GHYTEPNIAH 180
  181 IPGIKSWPGK QIHSHNYRVP DPFENEVVVV IGNFASGADI SRDIAKVAKE VHIASRAREP 240
  241 HTYEKISVPQ NNLWMHSEID TTHEDGSIVF KNGKVIFADS IVYCTGYKYN FPFLETNGYL 300
  301 RIDEKRVEPL YKHVFPPALA PGLAFVGLPA MGIVFVMFEI QSKWVAAVLS GRVTLPSTDK 360
  361 MMEDINAWYA SLDALGIPKR HTHTIGRIQS EYLNWVAKES GCELVERWRG QEVDGGYLRL 420
  421 VAHPETYRDE WDDDELIEEA YNDFSRKKLI SVDPSYYLEN GR

Type	Start	End	Confidence
Non-Cytoplasmic	1	317	0.82
Transmembrane Helix	318	338	0.67
Cytoplasmic	339	462	0.56