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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SBT22_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRVLMVNFG VLLLFCFGVL SNSFGQDNGG DSDINSTTAV YIVTLRQASS LHLFQQEAEE  60
   61 VKRVRDQSKH GDTSKFTRPK LQPRNISRSR YWRSRRSAIA QAHDSLLRNA LKGEKYIKLY 120
  121 SFHYLINGFA VFVSSQQAET LSRRREVANI VLDFSVRTAT TYTPQFMGLP KGAWVKEGGY 180
  181 ETAGEGIVIG FIDTGIDPTH PSFNGTDTSQ RQYPIPNHFS GVCEVTPDFP SGSCNRKLVG 240
  241 ARHFAQSAIT RGIFNSSEDY ASPFDGDGHG THTASIAAGN HGVSAVVSGH NFGSASGIAP 300
  301 RAHISVYKAL YKSFGGFAAD VVAAIDQAAQ DGVDILSLSI TPNRRPPGVA TFFNPLDMAM 360
  361 LSAVKAGIFV VQAAGNTGPS PKSMSSFSPW IFTVGAASHD RDYSNSIVLG NNVSIPGVGL 420
  421 ALRTDEGKKY TMISALDALK NKSSVVDKDM YVGECQDYGS FDKDVIRGNL LICSYSIRFV 480
  481 LGLSTIKQAL AVAKNLSAKG VVFYMDPYVL GFQINPTPMD MPGIIIPSAE DSKVLLKYYN 540
  541 SSLVRDGTTK EIVRFGAVAA IAGGQNANFS NRAPKIMYYS ARGPDPQDSL FNDADILKPN 600
  601 LVAPGNSIWG AWSSAATEST EFEGESFAMM SGTSMAAPHV AGVAALVKQK FRKFSPSAIA 660
  661 SALSTTSVLF DNKGEAIMAQ RAYANPDQTI SPATPFDMGN GFVNATAALD PGLIFDTSFE 720
  721 DYMSFLCGIN GSAPVVFNYT GTNCLRNNAT ISGSDLNLPS ITVSKLNNTR TVQRLMTNIA 780
  781 GNETYTVSLI TPFDVLINVS PTQFSIASGE TKLLSVILTA KRNSSISSFG GIKLLGNAGH 840
  841 IVRIPVSVTV KIASKQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle