YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5103809, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPNGYRKER RKEQHLGRMN GGGGDVETDL DPWTAWAYKP RTISLLLIGA CFLIWASGAL  60
   61 DPDSTTSDDL VTSVKRGVWA MIAVFLAYSL LQAPSTVLIR PHPAIWRLVH GMAVIYLVAL 120
  121 TFLLFQRRDD ARQFMKFLHP DLGIELPEKS YGADCRIYVP DHPTNRFKNL YDTVFDEFFL 180
  181 AHIFGWWGKA ILIRNQPLLW VLSIGFELLE VTFRHMLPNF NECWWDSIVL DILICNWFGI 240
  241 WAGMYTVRYF DGKTYEWVGI SRQPNIIGKV KRTLGQFTPA HWDKDEWHPL QGPWRFIQVL 300
  301 TLCIIFLTVE LNTFFLKFSL WIPPRNPVIL YRLILWWLIA IPTTREYNSY LQDRKPVKKV 360
  361 GAFCWLSLGI CIVELLICIK FGSGRWIVPN RNAIVGSDTM GKCGTWTCGL LAVLDMEDPE 420
  421 DPRAKETLSA SLLLQQRRER NRGETVKCHC GFFL

Type	Start	End	Confidence
Cytoplasmic	1	41	0.60
Transmembrane Helix	42	60	0.88
Non-Cytoplasmic	61	76	0.51
Transmembrane Helix	77	99	0.81
Cytoplasmic	100	103	0.47
Transmembrane Helix	104	125	0.90
Non-Cytoplasmic	126	189	0.45
Transmembrane Helix	190	213	0.53
Cytoplasmic	214	222	0.63
Transmembrane Helix	223	245	0.80
Non-Cytoplasmic	246	295	0.68
Transmembrane Helix	296	316	0.93
Cytoplasmic	317	327	0.60
Transmembrane Helix	328	345	0.81
Non-Cytoplasmic	346	360	0.57
Transmembrane Helix	361	383	0.86
Cytoplasmic	384	454	0.65