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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|6729526, gi|1...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.66
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFLRLLTLL VSSYFFFFIN FSSSLNPDGL SLLALKSAIL RDPTRVMTSW SESDPTPCHW  60
   61 PGIICTHGRV TSLVLSGRRL SGYIPSKLGL LDSLIKLDLA RNNFSKPVPT RLFNAVNLRY 120
  121 IDLSHNSISG PIPAQIQSLK NLTHIDFSSN LLNGSLPQSL TQLGSLVGTL NLSYNSFSGE 180
  181 IPPSYGRFPV FVSLDLGHNN LTGKIPQIGS LLNQGPTAFA GNSELCGFPL QKLCKDEGTN 240
  241 PKLVAPKPEG SQILPKKPNP SFIDKDGRKN KPITGSVTVS LISGVSIVIG AVSISVWLIR 300
  301 RKLSSTVSTP EKNNTAAPLD DAADEEEKEG KFVVMDEGFE LELEDLLRAS AYVVGKSRSG 360
  361 IVYRVVAGMG SGTVAATFTS STVVAVRRLS DGDATWRRKD FENEVEAISR VQHPNIVRLR 420
  421 AYYYAEDERL LITDYIRNGS LYSALHGGPS NTLPSLSWPE RLLIAQGTAR GLMYIHEYSP 480
  481 RKYVHGNLKS TKILLDDELL PRISGFGLTR LVSGYSKLIG SLSATRQSLD QTYLTSATTV 540
  541 TRITAPTVAY LAPEARASSG CKLSQKCDVY SFGVVLMELL TGRLPNASSK NNGEELVRVV 600
  601 RNWVKEEKPL SEILDPEILN KGHADKQVIA AIHVALNCTE MDPEVRPRMR SVSESLGRIK 660
  661 SD

YRC Informatics Platform - Version 3.0
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