YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATL7_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYSDPNQNP IPETYAPSNS TESEKLKLYQ AFIFSVPICF TFIVLFVLYV IYLRRNSTTN  60
   61 VDWSSLGMRG GTFVPTNNNL STAELGLSKD IREMLPVVIY KESFIVKDSQ CSVCLGDYQA 120
  121 EEKLQQMPSC GHTFHMECID LWLTSHTTCP LCRLSLIPKP SLDLSHQSTE IVSSIENSNG 180
  181 GEASTQPDSQ SATEAISHTD DVEEGNRDSQ EVSKETEEND RNSVGTSDGC CTCRLG

Type	Start	End	Confidence
Cytoplasmic	1	30	0.82
Transmembrane Helix	31	53	0.92
Non-Cytoplasmic	54	236	0.85