YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7485336, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLKHHHRGL ELSASKSFVS KKWTLFLCIG FFCAGILFSD RMWPEPESNV VSRDTVASDE  60
   61 RLRLESEDCD SSKGLKRESK DILGDVYKSP DAIQTLDKTI SKLETELADA RAAQESIMNG 120
  121 SPVSDDFKLP ETVTKRKYLM VVGVNTAFSS RKRRDSVRAT WMPPGEERKK LEEEKGIVMR 180
  181 FVIGHSSTPG GILDRAIQAE ESKHGDFLRL DHVEGYLELS AKTKTYFTTA FAMWDADFYV 240
  241 KVDDDVHVNI ATLGAELARY RMKPRVYIGC MKSGPVLAQK GVRYHEPEYW KFGEEGNKYF 300
  301 RHATGQLYAI SRELASYISI NQNVLHKYVN EDVSLGSWFL GLDVEHVDDR RLCCGTTDCE 360
  361 WKAQAGNICV ASFDWSCSGI CRSADRMKDV HRRCGEGEKA LLAASF

Type	Start	End	Confidence
Cytoplasmic	1	20	0.66
Transmembrane Helix	21	40	0.65
Non-Cytoplasmic	41	406	0.99