YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3757529, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEYRLGELR HLLTTVFLSG FSEFLVKPVM TDVTVAAVCS GLNETCSLAV YLTGVEQVTV  60
   61 GLGTMVMMPV IGNLSDRYGI KTLLTLPMCL SILPPAILAY RRDTNFFYAF YITKILFDMA 120
  121 KNVCGRKRIS MFGVLAGVRS ISGVCATFSA RLLPIASIFQ VAAISFFFGL VYMRVFLKER 180
  181 LHDDDEDDCD EDDNTSGRNH HDGGDLTMLA EPILRDAPTK IHIVLNTKYS SLKDMYFLKA 240
  241 RFGFNKNDFA ELILLVTIIG SISQLFILPK LVSAIGERRV LSTGLLMDSV NAACLSVSWS 300
  301 AWVPYATTVL VPVTMFVMPS VCGIASRQVG PGEQGKVQGC ISGVKSFSGV VAPFIYSPLT 360
  361 ALFLSEKAPF YFPGFSLLCV TFSLMIGFFL SLLIRDVPSP SMNKAINNIS REEA

Type	Start	End	Confidence
Cytoplasmic	1	47	0.50
Transmembrane Helix	48	72	0.52
Non-Cytoplasmic	73	77	0.23
Transmembrane Helix	78	100	0.66
Cytoplasmic	101	128	0.50
Transmembrane Helix	129	150	0.58
Non-Cytoplasmic	151	154	0.52
Transmembrane Helix	155	173	0.89
Cytoplasmic	174	248	0.84
Transmembrane Helix	249	268	0.85
Non-Cytoplasmic	269	304	0.71
Transmembrane Helix	305	325	0.88
Cytoplasmic	326	340	0.81
Transmembrane Helix	341	364	0.81
Non-Cytoplasmic	365	370	0.85
Transmembrane Helix	371	394	0.92
Cytoplasmic	395	414	0.95