YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149045719
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.82
Transmembrane Helix	15	39	0.78
Non-Cytoplasmic	40	329	0.98
Transmembrane Helix	330	349	0.52
Cytoplasmic	350	469	0.58
Transmembrane Helix	470	493	0.86
Non-Cytoplasmic	494	496	0.50
Transmembrane Helix	497	520	0.83
Cytoplasmic	521	528	0.48
Transmembrane Helix	529	550	0.91
Non-Cytoplasmic	551	557	0.55
Transmembrane Helix	558	579	0.72
Cytoplasmic	580	590	0.44
Transmembrane Helix	591	609	0.88
Non-Cytoplasmic	610	634	0.64
Transmembrane Helix	635	656	0.83
Cytoplasmic	657	685	0.62
Transmembrane Helix	686	707	0.93
Non-Cytoplasmic	708	720	0.61
Transmembrane Helix	721	741	0.94
Cytoplasmic	742	753	0.56
Transmembrane Helix	754	779	0.77
Non-Cytoplasmic	780	846	0.65
Transmembrane Helix	847	869	0.88
Cytoplasmic	870	875	0.57
Transmembrane Helix	876	898	0.85
Non-Cytoplasmic	899	904	0.53
Transmembrane Helix	905	924	0.79
Cytoplasmic	925	932	0.47
Transmembrane Helix	933	955	0.53
Non-Cytoplasmic	956	961	0.71
Transmembrane Helix	962	983	0.91
Cytoplasmic	984	1032	0.93
Transmembrane Helix	1033	1054	0.90
Non-Cytoplasmic	1055	1068	0.81
Transmembrane Helix	1069	1092	0.88
Cytoplasmic	1093	1109	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSILLFSTRM QKISVLLFLA WVCFLFYAGI ALFTSGFLLT RLELTNQSSC QEPPGPGSLP  60
   61 WGSQGKPGAC WMPSRFSRVV LVLIDALRFD FAQPQCSHVP GEPPVSVPFL GKLGSLKRIL 120
  121 EVQPHHARLY QSQVDPPTTT MQRLKALTTG SLPTFIDAGS NFASHAIVED NLIKQLTSAG 180
  181 KRVVFMGDDT WKDLFPGAFS QAFFFSSFNV RDLHTVDNGI LEHLYPTMDS GAWDVLIAHF 240
  241 LGVDHCGHKH GPHHPEMAKK LSQMDQVIQG LIERLENDTL LVVAGDHGMT MNGDHGGDSE 300
  301 LEVSAALFLY SPTVLFPSVP PEEPEVIPQI SLVPTLALLL GLPIPFGNIG EVMAELFSGG 360
  361 SGGGSSRGDG DASHPDSPAL AQVSALYINA QQVSRFLHTY SAATQDLHVK ELRRLQELFS 420
  421 KASARYQHLL QHPREAEAAL SSLTADFQQF LRGARAVCIE SWARFSLVRM AGGAALLAAA 480
  481 CLLCLLASQL AVAPGFLFRP LLLIPVAWGL TWTLLYAGVS VTTGSKLDPV VLGAVAAAGS 540
  541 LLPFLWKAWL SWGSKRPLAP LLPVPRPVLA LLLIRLATFF SDSFVVAEAR ATPFLLGSLI 600
  601 LFLVAQLHWE GQLLPPKLLT TSRLGSSAPT APPRHSGTHA LLLGIGLLLF TRLAGLFHRC 660
  661 PEETPACRSS PWLSPLASMV GGRAKNLWYG ACVGALVALL AAVRLWLRRY GNLKSPEPPV 720
  721 LFVRWGLPLM VLGTAAYWAL ASGAEEVPPR LRALVAGASA VLPRAVMGLA ASGLMLLLWR 780
  781 PVTVLVKAGA ATSRTRTILT PFSGPPTSQA DLDYVVPQIY RHMQEEFQGR LERTRAQGPI 840
  841 TVAAYQLGSV YSAAMVTALI LLAFPLLLLH VERVSLVFLL LFLQSFLLLH LLAAGTPVAT 900
  901 PGPFTVMWQA VSAWVLLATQ TFYSTGHQPV FSAIHWHAAF VGFPDGHGSS TWLPALLVGA 960
  961 NTFASHLLFA VGCPLLLLWP FLCERQGPKK RQSLPGSESE ARVRPEEEQE EPLMEMRLRD1020
 1021 APHHFNAALL QLGLKYLFVL GAQILACALA ASILRRHLMV WKVFAPKFIF EAIGFIVSSV1080
 1081 GLLLGIALVM RVDGAVSSWF KKLVLAQQR