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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: RHD32_ARATH
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGENDDGCST QLIDGNGEFN VKGLDNFVKK TKLSDCGLSY AVVAIMGPQS SGKSTLLNHL  60
   61 FKTSFREMDA FAGRSQTTKG IWMARCVGIE PFTIAMDLEG TDGRERGEDD TTFEKQSALF 120
  121 AIAVADIVLI NMWCHDIGRE QAANKPLLKT VFQVMLRLFS PRKTTLLFVI RDKTKTPIEL 180
  181 LERALREDIQ KIWDSVRKPE AHKNTPLNEF FNVMIVALSS YEEKEKQFEQ EVAELRQRFF 240
  241 HSISPGGLAG DRRGVVPASG FSFSSQQIWK VIKENRDLDL PAHKVMVATV RCEEIANEKL 300
  301 RDLATNESWL ELHEAAEGGL VPGFGKKLSS ILEKYFSEYD AEAIYFDEGV RKEKRLQLKL 360
  361 NALDFVYPSY ATMLGHLRSN ALESFKIRLE QSLNQGEGFA KAVRDSQQSC LMVFDKGCED 420
  421 AAVKQATWDA SKIREKLCRD IDAHTFFARS AKLSELTANY EKRLTQALSE PVESLFEAGG 480
  481 KETWPSIRKL LKRETETAVT DFLDVVTGFE LDHAKIDAMV QNLKNYSQSL VEKKAREEAA 540
  541 KILIRMKDRF STVFSHDKDS MPRVWTGKED IRAITKDARA EALSLLSVMT AIRLDERPDN 600
  601 IESTLFSSLM DGTVSAASSH NRSVGTSTDP LASSSWEEVP PNNILLTPVQ CKSLWRQFKS 660
  661 ETEYTVTQAI SAQEAHKRNN NWLPPAWAIV LMIVLGFNEF MMLLKNPLYL LGFFVAFLLS 720
  721 KALWVQLDIP REFQHGAVAG VLSITSKFLP TVMNLLRKLA EEAQGKTTQE VPDLSASQTY 780
  781 RQQSPSHSIS STISESVASN ISSAGDDAEY SSPSPALVRR RNTNNVQESE ISQM

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle