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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|157821033, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.71
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARLRALLHC LLPWYCALCA AAGSQTPDPR LSGKLHDYVV TVPCSTDFQG RFLSHVVSAP  60
   61 AAASSRSHLR VARSPLSLER ETPRPRHHFL YFNVTVFGKL LHLRLQPNRR LVAPGAPVEW 120
  121 QEDFRELFRQ PLQRECVYTG GVTGMPGAAV AISNCDGLAG LIRTDNSDFF IEPLERGQQE 180
  181 KEAGGRTHVV YRREAVQREW TEPHGDLHNE AFGLGDLPNV LDLVGDQLGD TERKRRHAKP 240
  241 GSYSIEVLLA VDDSVVRFHG REHTQNYVLT LMNIVDEIYH DESLGAHVNI ALVRLIMVGY 300
  301 RQSLSLIERG NPARSLEQVC RWAHSQQRQD PSHTEHHDHV IFLTRQNFGP SGLAWSMMAK 360
  361 AMAVMTRPVW AASWRPWFRL PSTAFIGLAA ASWNSAVTSR RLPSRYLLSY NCLLDDPFER 420
  421 TWPQPPELPG IDYSMDEQCR FDFGTGYHTC LAFRTFEPCK QLWCSHPDNP YFCKTKKGPP 480
  481 LDGTECAPGK WCFKGHCVWK SPEQTYGQDG GWSSWTNFGS CSRSCGGGVR SRSRSCDNPP 540
  541 PAYGGRLCSG PMFEYQICNS EDCPGPFEDF RAQQCAKRNS YYTHQDAKHS WLPYEPDSEA 600
  601 QKCELICQSA DTGDVVFMNQ VVHDGTRCSY RDPYSVCARG ECVPFGCDKE VGSMKTDDKC 660
  661 GVCGGDNSHC RTVKGTLGKA SKQAAALKQV QIPAGARHIQ IELLEKAPRR IAVKNQVTGS 720
  721 FILNPKGKEA SSRTFTALGL EWEHAAEDTK DSLKTNGPLP EAIAVLVLPP AEGKPRGSLA 780
  781 YKYVIHEDLL PLIGSNNVLL EEMDSYEWAL KSWSPCSKAC GGGIQFTKYG CRHRRDHHMV 840
  841 QRHLCDHKKR PKAIRRRCNQ HPCPQPTWVT EEWGACSRSC GKLGLQTRGV QCLLPLSNGT 900
  901 HKAMPAKACL GNRPEAKRPC LRVPCPAQWR TGAWSQCSAT CGKGIQQRQV VCRNSSSALG 960
  961 PCEGVKPDTV RICSQPACGG DLQNSTVNAE VQDPVTKMGP WEPQSRPLTP MNRISTMEPC1020
 1021 VGDRSVFCRM EVLDRYCTIP GYLRLCCESC IKKASSSNAS LASLPTFSTP GSLLPEPTAT1080
 1081 QEDMESTRGP TRLEDHRQSQ PTQLSGAVDR ISSVTQHLVT PPDAKP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle