YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPAT4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPAKKSRSF PPISECKSRE YDSIAADLDG TLLLSRSSFP YFMLVAIEAG SLFRGLILLL  60
   61 SLPIVIIAYL FVSESLGIQI LIFISFAGIK IKNIELVSRA VLTRFYAADV RKDSFEVFDK 120
  121 CKKRKVVVTA NPIVMVEPFV KDYLGGDKVL GTEIEVNPKT MKATGFVKKP GVLVGDLKRL 180
  181 AILKEFGDDS PDLGLGDRTS DHDFMSICKE GYMVHETKSA TTVPIESLKN RIIFHDGRLV 240
  241 QRPTPLNALI IYLWLPFGFM LSVFRVYFNL PLPERFVRYT YEILGIHLTI RGHRPPPPSP 300
  301 GKPGNLYVLN HRTALDPIII AIALGRKITC VTYSVSRLSL MLSPIPAVAL TRDRVADAAR 360
  361 MRQLLEKGDL VICPEGTTCR EPYLLRFSAL FAELSDRIVP VAMNCKQGMF NGTTVRGVKF 420
  421 WDPYFFFMNP RPSYEATFLD RLPEEMTVNG GGKTPFEVAN YVQKVIGGVL GFECTELTRK 480
  481 DKYLLLGGND GKVESINKTK SME

Type	Start	End	Confidence
Cytoplasmic	1	40	0.92
Transmembrane Helix	41	72	0.73
Non-Cytoplasmic	73	74	0.40
Transmembrane Helix	75	89	0.82
Cytoplasmic	90	247	0.90
Transmembrane Helix	248	268	0.91
Non-Cytoplasmic	269	503	0.88