YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7267104, gi\|3...
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTGDLVNIH PTELKFPFEL KKQSSCSMQL TNKTTTQCVA FKVKTTNPRK YCVRPNTGVV  60
   61 LPGDSCNVTV NNTKDDCCFV SVTMQAQKEA PLDMQCKDKF LVQTVVVSDG TTSKEVLAEM 120
  121 FNKEAGRVIE DFKLRVVYIP ANPPSPVPEG SEEGNSPMAS LNDIASQSAS LFDDVSRTFE 180
  181 ETSEKSSEAW SMISKLTEEK TSATQQSQKL RLELVRVDPS ALRNAEERNK QEAVGWSFLA 240
  241 LDAAGGSARL RDWLLIEPDI NAMGTSFKIN LMGISKALRS LLILLLLNIT FFFGHVTPGA 300
  301 TVKPCPPPPA KQATTKCPRD TLKFGVCGSW LGLVSEVIGT PPSQECCSLI KGLADFEAAV 360
  361 CLCTALKTSI LGVAPVKIPV ALTLLLNSCG KNVPQGFVC

Type	Start	End	Confidence
Cytoplasmic	1	276	0.51
Transmembrane Helix	277	296	0.53
Non-Cytoplasmic	297	399	0.89